Entry euk:A0A0R4IIU9_DANRE

ID   A0A0R4IIU9_DANRE        Unreviewed;       850 AA.
AC   A0A0R4IIU9;
DT   20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT   20-JAN-2016, sequence version 1.
DT   12-APR-2017, entry version 10.
DE   SubName: Full=Zgc:172323 {ECO:0000313|Ensembl:ENSDARP00000134256};
GN   ORFNames=zgc:172323 {ECO:0000313|Ensembl:ENSDARP00000134256,
GN   ECO:0000313|ZFIN:ZDB-GENE-080204-113};
OS   Danio rerio (Zebrafish) (Brachydanio rerio).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000134256, ECO:0000313|Proteomes:UP000000437};
RN   [1] {ECO:0000313|Ensembl:ENSDARP00000134256, ECO:0000313|Proteomes:UP000000437}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000134256,
RC   ECO:0000313|Proteomes:UP000000437};
RX   PubMed=23594743; DOI=10.1038/nature12111;
RA   Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA   Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA   McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA   Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA   Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA   Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA   Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA   Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA   Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA   Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA   Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA   Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA   Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA   Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA   Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA   Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA   Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA   Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA   Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA   Saunders D., Wallis J., Babbage A., Hammond S.,
RA   Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA   Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA   Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA   Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA   Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA   Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA   Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA   Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA   Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA   Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA   Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA   Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA   Stemple D.L.;
RT   "The zebrafish reference genome sequence and its relationship to the
RT   human genome.";
RL   Nature 496:498-503(2013).
RN   [2] {ECO:0000313|Ensembl:ENSDARP00000134256}
RP   IDENTIFICATION.
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000134256};
RG   Ensembl;
RL   Submitted (NOV-2015) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the intermediate filament family.
CC       {ECO:0000256|SAAS:SAAS00680696}.
CC   -!- CAUTION: The sequence shown here is derived from an Ensembl
CC       automatic analysis pipeline and should be considered as
CC       preliminary data. {ECO:0000313|Ensembl:ENSDARP00000134256}.
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DR   EMBL; CR848819; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   Ensembl; ENSDART00000168358; ENSDARP00000134256; ENSDARG00000053201.
DR   ZFIN; ZDB-GENE-080204-113; zgc:172323.
DR   GeneTree; ENSGT00830000128228; -.
DR   OMA; MQTRRQA; -.
DR   Proteomes; UP000000437; Chromosome 16.
DR   ExpressionAtlas; A0A0R4IIU9; baseline and differential.
DR   GO; GO:0005882; C:intermediate filament; ISS:ZFIN.
DR   GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR   InterPro; IPR001664; IF.
DR   InterPro; IPR006821; Intermed_filament_DNA-bd.
DR   PANTHER; PTHR23239; PTHR23239; 1.
DR   Pfam; PF00038; Filament; 1.
DR   Pfam; PF04732; Filament_head; 1.
DR   SMART; SM01391; Filament; 1.
PE   1: Evidence at protein level;
KW   Coiled coil {ECO:0000256|SAAS:SAAS00680713, ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW   Intermediate filament {ECO:0000256|SAAS:SAAS00680717};
KW   Proteomics identification {ECO:0000213|PeptideAtlas:A0A0R4IIU9};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT   DOMAIN        7    107       Filament_head.
FT                                {ECO:0000259|Pfam:PF04732}.
FT   COILED      221    255       {ECO:0000256|SAM:Coils}.
FT   COILED      327    393       {ECO:0000256|SAM:Coils}.
CC   --------------------------------------------------------------------------
CC   The following FT lines are automated annotations from the MyHits database.
CC   --------------------------------------------------------------------------
FT   MYHIT       108    421       ipfam:Filament [T]
FT   MYHIT       108    421       ismart:Filament [T]
FT   MYHIT         7    107       ipfam:Filament_head [T]
SQ   SEQUENCE   850 AA;  85774 MW;  7DB216D88E876842 CRC64;
     MSRSPERISS YRRHFEDSSS SSYQVRVSSP SPVRRDAGRC RSASYTRSNA MAVSNSRAVG
     RRTISTSRSQ PHLNGVGMGA ICLSGGGPGA DLDQAAAENR EFLSTRTSEK QEMILLNDRL
     AAYIEKASFV RSLEQQNKLL ETEIEVLQNR FLKPTGLRLL YEEQLKELMR LADQMRVQRD
     IAIAAKDAMA GQLEIIKVKY EEALEMRKKA ELDIEAFRPD VDAATSARIA LEKQLENLEV
     ELEFLRRVHK QEIEELMKQI YAAHASAMDA YSLPDLSNAL KQIQHQYDDI AAKNLQEMDS
     WYKNKFDDLN NKTSKHVDQV RHVREGIASA KKDIQNKERD MDSMNTKNEA LEAQIRDTQD
     KYRKELEDLQ ARIEALQLEL KSSKQRTALL LREYQDLLNV KMSLEIEITT YRKLIEGEDS
     RLTSMVQSMQ TMTLMSGSTS VHTVAAGAAN RGGRGLAGGL GGDVGLEFAG GLGGPATGLE
     RGVGRGLDGS ATVLGESVGG DAARGVGGGP TTVLGGHVDG GLGGGIGSGP AIGLGGGVGS
     GPATGFAGGV GGDPAKGLPG GVGGGPATGL GGGVGGDPAK GLPGGVGGGP ATGLTGGVGG
     DPGKGLSDVG GVPATSLAGG VGGDPAKGLP GGVGGGPATG LAGGVGVDPA KGLPGGVSGG
     PASGLAGGVG GDTAKGLPGG VGGGPATGLA GGVGGVPVTG LAGGVGGDPS KGLPGGVGGG
     PASGLAGGVG GDFAKGFEGA LGGSSTTGLG GGDPAKGLVG GVGGGSATSL VGGTSSGLGA
     GTGVAGGFIN GVTGGVSGIG TTVDYTEEQA VEMTERKTVL IRTFKTEDNI LESSTQQKSY
     CISGAASEEE
//