ID A0A0R4IFQ8_DANRE Unreviewed; 821 AA.
AC A0A0R4IFQ8;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 12-APR-2017, entry version 8.
DE SubName: Full=Family with sequence similarity 171, member A1 {ECO:0000313|Ensembl:ENSDARP00000132306};
GN Name=fam171a1 {ECO:0000313|Ensembl:ENSDARP00000132306,
GN ECO:0000313|ZFIN:ZDB-GENE-061208-1};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000132306, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000132306, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000132306,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
RN [2] {ECO:0000313|Ensembl:ENSDARP00000132306}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000132306};
RG Ensembl;
RL Submitted (NOV-2015) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000132306}.
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DR EMBL; BX322614; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR Ensembl; ENSDART00000165687; ENSDARP00000132306; ENSDARG00000079788.
DR ZFIN; ZDB-GENE-061208-1; fam171a1.
DR GeneTree; ENSGT00530000063318; -.
DR Proteomes; UP000000437; Chromosome 16.
DR ExpressionAtlas; A0A0R4IFQ8; baseline.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR Gene3D; 2.60.40.10; -; 1.
DR InterPro; IPR013783; Ig-like_fold.
DR InterPro; IPR018890; Uncharacterised_FAM171.
DR Pfam; PF10577; UPF0560; 2.
PE 1: Evidence at protein level;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Proteomics identification {ECO:0000213|PeptideAtlas:A0A0R4IFQ8};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 272 295 Helical. {ECO:0000256|SAM:Phobius}.
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CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 2 373 ipfam:UPF0560 [T]
FT MYHIT 370 819 ipfam:UPF0560 [T]
SQ SEQUENCE 821 AA; 89650 MW; 323010081A82BDA3 CRC64;
EVVLKVHLSD SSTHQPLSGV TVEVFTNHTP VSSDVSGADG NAFIRFPYRL VDLLVVTATK
RGYVPNSVPW RPSRLPVFSS LSLDLLPERA ATLMVYEDVV EIVSGFQDAK LQPRVQFQRR
ALSLPSNATY TNLTAFLTVS SSTQDTQYFP YLQGLHPNFT GSERKFELTP IAALSVHLLG
SDGVELHVSE PISVSVPLPA NSGLKENDHI PAWRFDPKLG EFIKSQLGYV QREGKQLTLT
YIAPQLGYWV AAMSPINTGP VVAKDISTYH TVFLLVILGG MALILLFLLC LLLYYCRRKC
TRLRPAHRKF TLSSALDGSK RDQATSMSHL NLINETHLDQ NGAEPDMHTP MLKPTPYDSS
TNELATSRGE LHSRGRGEYR RSYTSITTSS VHPLHMSVSS SSPHTLHHTT SAGRLSSESK
SSLRDQRLSP VSAASPAGSP EREQGIERRT TDYLLSRSVD HLERPAPLPR PGALLCCTSE
LIVNKGEETY RKARPTLVIP AHYMRLPGTH PLSGQALLLQ SDVQSELETI QAELSACHQP
QGQVLHKGEQ EGGTQGMGED QGGGADEWTL QTAALPADLS IPNSLSQAGL DVVQMNGEDQ
LLAEKTLMEL RGGKPLPHPR AWFVSLDGRS NAHIRHSYID LQRAGCNSSC VGSNDASLDS
GVDMSDVTPG RRVRDKVVVK TEPEAQPAAP VVGHTPVLIV EDSNADEENS GSPTPVCSPE
ESALKGLLQE KQSEEDDEGT LSPPSPPPEI PSPPPLPEPV VETSEDTGID GEVFRTEETP
VHMNSSRPDK LLVPDDGGED ENKKSPWQKR EERPLLAFNL K
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