MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zinc finger protein 1160 {ECO:0000313|Ensembl:ENSDARP00000130328}; |
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| MyHits synonyms | A0A0R4IBR0_DANRE , A0A0R4IBR0 , C14E030AF75CD180 |
 Legends: 1, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 2, ipat:ZINC_FINGER_C2H2_1 [T]; 3, iprf:ZINC_FINGER_C2H2_2 [T]; 4, ismart:ZnF_C2H2 [T].
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ID A0A0R4IBR0_DANRE Unreviewed; 371 AA.
AC A0A0R4IBR0;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 10-MAY-2017, entry version 13.
DE SubName: Full=Zinc finger protein 1160 {ECO:0000313|Ensembl:ENSDARP00000130328};
GN Name=znf1160 {ECO:0000313|Ensembl:ENSDARP00000130328,
GN ECO:0000313|ZFIN:ZDB-GENE-050208-624};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000130328, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000130328, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000130328,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
RN [2] {ECO:0000313|Ensembl:ENSDARP00000130328}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000130328};
RG Ensembl;
RL Submitted (NOV-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|SAAS:SAAS00670694}.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000130328}.
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DR EMBL; AL954741; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; BX649416; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR Ensembl; ENSDART00000158813; ENSDARP00000130328; ENSDARG00000100196.
DR ZFIN; ZDB-GENE-050208-624; znf1160.
DR GeneTree; ENSGT00800000124383; -.
DR OMA; EANTEMQ; -.
DR Proteomes; UP000000437; Chromosome 22.
DR ExpressionAtlas; A0A0R4IBR0; baseline.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR InterPro; IPR027775; C2H2_Znf_fam_sub.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR10032; PTHR10032; 1.
DR SMART; SM00355; ZnF_C2H2; 10.
DR SUPFAM; SSF57667; SSF57667; 6.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 10.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 10.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Nucleus {ECO:0000256|SAAS:SAAS00670693};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 62 89 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 90 117 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 118 141 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 170 197 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 198 225 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 226 253 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 254 281 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 282 309 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 310 337 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 338 365 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 256 276 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 90 117 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 226 253 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 340 360 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 282 304 ismart:ZnF_C2H2 [T]
FT MYHIT 118 141 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 198 220 ismart:ZnF_C2H2 [T]
FT MYHIT 118 141 ismart:ZnF_C2H2 [T]
FT MYHIT 62 89 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 226 248 ismart:ZnF_C2H2 [T]
FT MYHIT 170 197 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 338 360 ismart:ZnF_C2H2 [T]
FT MYHIT 90 112 ismart:ZnF_C2H2 [T]
FT MYHIT 310 332 ismart:ZnF_C2H2 [T]
FT MYHIT 338 365 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 312 332 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 170 192 ismart:ZnF_C2H2 [T]
FT MYHIT 120 141 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 198 220 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 62 84 ismart:ZnF_C2H2 [T]
FT MYHIT 254 281 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 310 337 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 228 248 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 172 192 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 64 84 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 284 304 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 254 276 ismart:ZnF_C2H2 [T]
FT MYHIT 198 225 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 92 112 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 282 309 iprf:ZINC_FINGER_C2H2_2 [T]
SQ SEQUENCE 371 AA; 43358 MW; C14E030AF75CD180 CRC64;
MSDPEPCRIK QEETEELIDV LVKEESEALS EDERKHHVKS ETETQSETED NFPVETTELK
GFICTECGKS FKHKYTLNVH MKIHTGEKRY KCSQCEKRFI HSGQLKQHQR THSREKSFHC
SICGSSFKHL CSLRKHAKNF HDMIVKEEET EELSEDIKDH LSVHAKEKIH SCSWCGKSFI
QQSHLRKHQR IHTGEKPCTC PQCGKNFSKP SNLYLHLKIH TGEKPHKCDQ CGKTFLRPSV
LKNHLRLHTN DKPHSCSSCG KRFSQRSQLK DHQHVHTGVK EFVCFECKKT FVRAAELKRH
RQIHTGEKPY VCSHCNKRFS QSGDVKVHEL IHTTERPYTC TECGKSFTRL IYIYKHMRSH
NGEKANTFDQ L
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