MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zgc:113295 {ECO:0000313|Ensembl:ENSDARP00000131311}; |
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| MyHits synonyms | A0A0R4IBB2_DANRE , A0A0R4IBB2 , 2E0CA5ABE7872797 |
 Legends: 1, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 2, ipat:ZINC_FINGER_C2H2_1 [T]; 3, ismart:ZnF_C2H2 [T]; 4, iprf:ZINC_FINGER_C2H2_2 [T].
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ID A0A0R4IBB2_DANRE Unreviewed; 337 AA.
AC A0A0R4IBB2;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 10-MAY-2017, entry version 11.
DE SubName: Full=Zgc:113295 {ECO:0000313|Ensembl:ENSDARP00000131311};
GN ORFNames=zgc:113295 {ECO:0000313|Ensembl:ENSDARP00000131311,
GN ECO:0000313|ZFIN:ZDB-GENE-050320-122};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000131311, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000131311, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000131311,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
RN [2] {ECO:0000313|Ensembl:ENSDARP00000131311}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000131311};
RG Ensembl;
RL Submitted (NOV-2015) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000131311}.
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DR EMBL; CU138531; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR Ensembl; ENSDART00000172368; ENSDARP00000131311; ENSDARG00000074768.
DR ZFIN; ZDB-GENE-050320-122; zgc:113295.
DR GeneTree; ENSGT00850000132580; -.
DR Proteomes; UP000000437; Chromosome 3.
DR ExpressionAtlas; A0A0R4IBB2; baseline.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR013087; Znf_C2H2_type.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR SMART; SM00355; ZnF_C2H2; 10.
DR SUPFAM; SSF57667; SSF57667; 6.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 10.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 10.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 57 84 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 85 112 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 113 140 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 141 168 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 169 196 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 197 224 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 225 252 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 253 280 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 281 308 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 309 336 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 227 247 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 171 191 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 57 79 ismart:ZnF_C2H2 [T]
FT MYHIT 253 280 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 57 84 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 169 191 ismart:ZnF_C2H2 [T]
FT MYHIT 141 163 ismart:ZnF_C2H2 [T]
FT MYHIT 225 247 ismart:ZnF_C2H2 [T]
FT MYHIT 197 219 ismart:ZnF_C2H2 [T]
FT MYHIT 143 163 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 199 219 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 115 135 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 281 308 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 59 79 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 141 168 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 311 331 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 225 252 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 169 196 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 253 275 ismart:ZnF_C2H2 [T]
FT MYHIT 309 336 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 309 331 ismart:ZnF_C2H2 [T]
FT MYHIT 281 303 ismart:ZnF_C2H2 [T]
FT MYHIT 85 107 ismart:ZnF_C2H2 [T]
FT MYHIT 283 303 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 197 224 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 255 275 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 113 135 ismart:ZnF_C2H2 [T]
FT MYHIT 113 140 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 87 107 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 85 112 iprf:ZINC_FINGER_C2H2_2 [T]
SQ SEQUENCE 337 AA; 38101 MW; 2E0CA5ABE7872797 CRC64;
MSDPEPCRIK DEDTEESVDP IDGNGETEEG NDVKAGKIAP LKTCGVFTVK NGDKNPFTCT
RCAQILGNKK SLEIHMRIHT GEIPFTCTRC GRGFYQLSNL NKHMTIHTGE KPYTCTHCGR
GFYQPSLLNR HMRVHTGEKP FTCTQCGKSF NQATQLKQHM MNHTGEKPFT CTQCGTSFTQ
SSALNKHMRI HTGEKPYTCT QCGTSFGASS SLSRHMLIHT GEKTHKCDHC SKTFLSASHL
KVHLAVHRSE KPYSCPVCEK SFTLKCILKR HQKIHTGVRE HLCFKCVKTF MSAAELKQHE
RIHTGEKPFK CSHCDKRFRQ SGSLKTHERI HTGEKPY
//
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