ID A0A0K1H3E7_MAIZE Unreviewed; 1602 AA.
AC A0A0K1H3E7;
DT 11-NOV-2015, integrated into UniProtKB/TrEMBL.
DT 11-NOV-2015, sequence version 1.
DT 10-MAY-2017, entry version 11.
DE SubName: Full=Dicer-like 103 {ECO:0000313|EMBL:AQK44729.1};
DE SubName: Full=Dicer-like protein 4 {ECO:0000313|EMBL:AKT74385.1};
GN Name=dcl4 {ECO:0000313|EMBL:AKT74385.1};
GN ORFNames=ZEAMMB73_Zm00001d025830 {ECO:0000313|EMBL:AQK44729.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae;
OC PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
OC Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EMBL:AKT74385.1};
RN [1] {ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K.,
RA Abbott R.M., Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M.,
RA Gillam B., Chen W., Yan L., Higginbotham J., Cardenas M.,
RA Waligorski J., Applebaum E., Phelps L., Falcone J., Kanchi K.,
RA Thane T., Scimone A., Thane N., Henke J., Wang T., Ruppert J.,
RA Shah N., Rotter K., Hodges J., Ingenthron E., Cordes M., Kohlberg S.,
RA Sgro J., Delgado B., Mead K., Chinwalla A., Leonard S., Crouse K.,
RA Collura K., Kudrna D., Currie J., He R., Angelova A., Rajasekar S.,
RA Mueller T., Lomeli R., Scara G., Ko A., Delaney K., Wissotski M.,
RA Lopez G., Campos D., Braidotti M., Ashley E., Golser W., Kim H.,
RA Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A., Fan C.,
RA Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y.,
RA Jeddeloh J.A., Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z.,
RA Nagel D.H., McCann M.C., SanMiguel P., Myers A.M., Nettleton D.,
RA Nguyen J., Penning B.W., Ponnala L., Schneider K.L., Schwartz D.C.,
RA Sharma A., Soderlund C., Springer N.M., Sun Q., Wang H., Waterman M.,
RA Westerman R., Wolfgruber T.K., Yang L., Yu Y., Zhang L., Zhou S.,
RA Zhu Q., Bennetzen J.L., Dawe R.K., Jiang J., Jiang N., Presting G.G.,
RA Wessler S.R., Aluru S., Martienssen R.A., Clifton S.W., McCombie W.R.,
RA Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [2] {ECO:0000313|EMBL:AKT74385.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=26209554;
RA Petsch K., Manzotti P.S., Tam O.H., Meeley R., Hammell M.,
RA Consonni G., Timmermans M.C.;
RT "Novel DICER-LIKE1 siRNAs Bypass the Requirement for DICER-LIKE4 in
RT Maize Development.";
RL Plant Cell 27:2163-2177(2015).
RN [3] {ECO:0000313|EMBL:AQK44729.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQK44729.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EnsemblPlants:Zm00001d025830_T002}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001d025830_T002};
RG EnsemblPlants;
RL Submitted (OCT-2016) to UniProtKB.
CC -!- SIMILARITY: Belongs to the helicase family. Dicer subfamily.
CC {ECO:0000256|PROSITE-ProRule:PRU00657}.
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DR EMBL; KR230386; AKT74385.1; -; mRNA.
DR EMBL; CM000786; AQK44729.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44733.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44737.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44738.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44740.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44742.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44744.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44752.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44757.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44758.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44761.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44763.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44766.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44767.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44773.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44774.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44775.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44778.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44781.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44782.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44788.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44793.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44797.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44798.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44805.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44809.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44810.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44812.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44813.1; -; Genomic_DNA.
DR EMBL; CM000786; AQK44814.1; -; Genomic_DNA.
DR EnsemblPlants; Zm00001d025830_T002; Zm00001d025830_T002; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T005; Zm00001d025830_T005; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T014; Zm00001d025830_T014; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T015; Zm00001d025830_T015; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T021; Zm00001d025830_T021; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T022; Zm00001d025830_T022; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T024; Zm00001d025830_T024; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T025; Zm00001d025830_T025; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T026; Zm00001d025830_T026; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T027; Zm00001d025830_T027; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T029; Zm00001d025830_T029; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T030; Zm00001d025830_T030; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T031; Zm00001d025830_T031; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T037; Zm00001d025830_T037; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T039; Zm00001d025830_T039; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T040; Zm00001d025830_T040; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T041; Zm00001d025830_T041; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T042; Zm00001d025830_T042; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T044; Zm00001d025830_T044; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T046; Zm00001d025830_T046; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T049; Zm00001d025830_T049; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T051; Zm00001d025830_T051; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T052; Zm00001d025830_T052; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T054; Zm00001d025830_T054; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T056; Zm00001d025830_T056; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T057; Zm00001d025830_T057; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T058; Zm00001d025830_T058; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T061; Zm00001d025830_T061; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T062; Zm00001d025830_T062; Zm00001d025830.
DR EnsemblPlants; Zm00001d025830_T070; Zm00001d025830_T070; Zm00001d025830.
DR Gramene; Zm00001d025830_T002; Zm00001d025830_T002; Zm00001d025830.
DR Gramene; Zm00001d025830_T005; Zm00001d025830_T005; Zm00001d025830.
DR Gramene; Zm00001d025830_T014; Zm00001d025830_T014; Zm00001d025830.
DR Gramene; Zm00001d025830_T015; Zm00001d025830_T015; Zm00001d025830.
DR Gramene; Zm00001d025830_T021; Zm00001d025830_T021; Zm00001d025830.
DR Gramene; Zm00001d025830_T022; Zm00001d025830_T022; Zm00001d025830.
DR Gramene; Zm00001d025830_T024; Zm00001d025830_T024; Zm00001d025830.
DR Gramene; Zm00001d025830_T025; Zm00001d025830_T025; Zm00001d025830.
DR Gramene; Zm00001d025830_T026; Zm00001d025830_T026; Zm00001d025830.
DR Gramene; Zm00001d025830_T027; Zm00001d025830_T027; Zm00001d025830.
DR Gramene; Zm00001d025830_T029; Zm00001d025830_T029; Zm00001d025830.
DR Gramene; Zm00001d025830_T030; Zm00001d025830_T030; Zm00001d025830.
DR Gramene; Zm00001d025830_T031; Zm00001d025830_T031; Zm00001d025830.
DR Gramene; Zm00001d025830_T037; Zm00001d025830_T037; Zm00001d025830.
DR Gramene; Zm00001d025830_T039; Zm00001d025830_T039; Zm00001d025830.
DR Gramene; Zm00001d025830_T040; Zm00001d025830_T040; Zm00001d025830.
DR Gramene; Zm00001d025830_T041; Zm00001d025830_T041; Zm00001d025830.
DR Gramene; Zm00001d025830_T042; Zm00001d025830_T042; Zm00001d025830.
DR Gramene; Zm00001d025830_T044; Zm00001d025830_T044; Zm00001d025830.
DR Gramene; Zm00001d025830_T046; Zm00001d025830_T046; Zm00001d025830.
DR Gramene; Zm00001d025830_T049; Zm00001d025830_T049; Zm00001d025830.
DR Gramene; Zm00001d025830_T051; Zm00001d025830_T051; Zm00001d025830.
DR Gramene; Zm00001d025830_T052; Zm00001d025830_T052; Zm00001d025830.
DR Gramene; Zm00001d025830_T054; Zm00001d025830_T054; Zm00001d025830.
DR Gramene; Zm00001d025830_T056; Zm00001d025830_T056; Zm00001d025830.
DR Gramene; Zm00001d025830_T057; Zm00001d025830_T057; Zm00001d025830.
DR Gramene; Zm00001d025830_T058; Zm00001d025830_T058; Zm00001d025830.
DR Gramene; Zm00001d025830_T061; Zm00001d025830_T061; Zm00001d025830.
DR Gramene; Zm00001d025830_T062; Zm00001d025830_T062; Zm00001d025830.
DR Gramene; Zm00001d025830_T070; Zm00001d025830_T070; Zm00001d025830.
DR Proteomes; UP000007305; Chromosome 10.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0004525; F:ribonuclease III activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR CDD; cd00593; RIBOc; 2.
DR Gene3D; 1.10.1520.10; -; 2.
DR InterPro; IPR005034; Dicer_dimerisation_dom.
DR InterPro; IPR014720; dsRBD_dom.
DR InterPro; IPR006935; Helicase/UvrB_N.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR003100; PAZ_dom.
DR InterPro; IPR000999; RNase_III_dom.
DR Pfam; PF03368; Dicer_dimer; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF02170; PAZ; 1.
DR Pfam; PF04851; ResIII; 1.
DR Pfam; PF00636; Ribonuclease_3; 2.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00358; DSRM; 2.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00949; PAZ; 1.
DR SMART; SM00535; RIBOc; 2.
DR SUPFAM; SSF52540; SSF52540; 2.
DR SUPFAM; SSF69065; SSF69065; 3.
DR PROSITE; PS51327; DICER_DSRBF; 1.
DR PROSITE; PS50137; DS_RBD; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS50821; PAZ; 1.
DR PROSITE; PS00517; RNASE_3_1; 1.
DR PROSITE; PS50142; RNASE_3_2; 2.
PE 2: Evidence at transcript level;
KW Complete proteome {ECO:0000313|Proteomes:UP000007305};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00657}.
FT DOMAIN 32 190 Helicase ATP-binding.
FT {ECO:0000259|PROSITE:PS51192}.
FT DOMAIN 359 521 Helicase C-terminal.
FT {ECO:0000259|PROSITE:PS51194}.
FT DOMAIN 544 634 Dicer dsRNA-binding fold.
FT {ECO:0000259|PROSITE:PS51327}.
FT DOMAIN 872 936 PAZ. {ECO:0000259|PROSITE:PS50821}.
FT DOMAIN 953 1131 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1172 1316 RNase III. {ECO:0000259|PROSITE:PS50142}.
FT DOMAIN 1342 1409 DRBM (double-stranded RNA-binding).
FT {ECO:0000259|PROSITE:PS50137}.
FT DOMAIN 1515 1591 DRBM (double-stranded RNA-binding).
FT {ECO:0000259|PROSITE:PS50137}.
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CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 1342 1409 iprf:DS_RBD [T]
FT MYHIT 1172 1316 iprf:RNASE_3_2 [T]
FT MYHIT 544 627 ipfam:Dicer_dimer [T]
FT MYHIT 397 480 ismart:HELICc [T]
FT MYHIT 1515 1591 iprf:DS_RBD [T]
FT MYHIT 1343 1408 ismart:DSRM [T]
FT MYHIT 1516 1590 ismart:DSRM [T]
FT MYHIT 872 936 iprf:PAZ [T]
FT MYHIT 21 236 ismart:DEXDc [T]
FT MYHIT 359 521 iprf:HELICASE_CTER [T]
FT MYHIT 544 634 iprf:DICER_DSRBF [T]
FT MYHIT 1207 1316 ipfam:Ribonuclease_3 [T]
FT MYHIT 983 1151 ismart:RIBOc [T]
FT MYHIT 1187 1339 ismart:RIBOc [T]
FT MYHIT 1001 1131 ipfam:Ribonuclease_3 [T]
FT MYHIT 32 190 iprf:HELICASE_ATP_BIND_1 [T]
FT MYHIT 360 478 ipfam:Helicase_C [T]
FT MYHIT 835 958 ipfam:PAZ [T]
FT MYHIT 953 1131 iprf:RNASE_3_2 [T]
FT MYHIT 811 962 ismart:PAZ [T]
FT MYHIT 1207 1215 ipat:RNASE_3_1 [T]
FT MYHIT 36 190 ipfam:ResIII [T]
SQ SEQUENCE 1602 AA; 182121 MW; DB6ED1909A4D25D7 CRC64;
MSEDEAESSS SGAAASEPKD PRTIARKYQL DLCKRAVDEN IIVYLGTGCG KTHIAVLLMY
ELGHLIRKPS REVCVFLAPT IPLVRQQAMV IADSTNFKVQ RYYGSGKHSR DHQAWEKEMG
EYEVLVMTPQ ILLHNLRHCF IRMDLIALLI FDECHHAQAQ KRHPYAQIMK EFYNNADKHP
RVFGMTASPI IGKGGSNKLT YTKCINSLEE LLNAKVCSVD NVELESVIAS PKVEVYFYGP
VGHSNLTTAY IKELGGYKFQ SECMLRESVC NFNESLKKLK SLWRLHENLI FCLQEVGLFG
ALQAARTFLS SSSVSLDGKG ADINDYANKA MSLLSRDILE GPDADSFDLE TIEEPFFSKK
FAVLINVLSR YRLEENMKCI VFVKRIIVAR VVVQILQNLK CLDFWRCEFL VGCHSGLRNM
SRDKMSSIIE KFSSGEVNLL VATSVGEEGL DIQTCCLVVR FDLPETVNSF IQSRGRARMS
KSKYVFLLER GNHSQEKLLD DYITGEIIMD KEINLRTSND MFNCLEENIY RVNDTGASIS
TACSVSLLHR YCDNLPRDIF FVPSPSFFFV DDVDGIVCKL ILPPNAAFRQ VNGQPCPSKD
EAKRDACLKA CIKLHELGAL TDFLLPGQGS RKIKVSTTNN SESNKDDDES FREELYEMLI
PAVLRPSRCK LDSSFKLHFY YIEFIPIPAD RRYQMFGLFV INRLPEESEK LDVELHLARA
RIVKAGIKYL GKIEFNKEEM ILAHNFQEMF LKVLLDRSEF TPSYILLGND GALDMDSTFY
LLLPIKQKFY GDNMIDWPAV KRCLSSPAFQ DPMGLSLHDS YLPNESLKLL GGTYNKADVI
GSLVYTPHTD LFFFVDAILD GTNAKSELNG ATYAEHFKQR LHIKLSHPEQ PLLKAKQLFC
LRNLLHNRQL ESTESEAREL MEHFVELPPE LCSLKIIGFS KDMGSSLSLL PSLMYRLENL
LVAIELKDVM SSYFPEASQI SASGILESLT TERCLERISL ERLEVLGDAF LKYVVGRHNF
ISYEGLDEGQ LTRRRSDIVS NSNLYELSIR RNLQVYIRDQ HFEPTQFFAL GRPCKVVCNP
DREATLHPKN IDPDRRENCN LRCTKSHHWL HRKTIADVVE SLLGVFIVEC GFKAAFAFLH
WIGIKVDFEN SAFYRVLDAS STNLSLMNYM NISELEELIG YTFKRKGLLL QAFVHPSFNK
HSGGCYQRME FLGDAVLEYL MTSYLYSAYP DLKPGQLTDL KSLAVNNNSF AYVAVKKSIH
RYLIKDSNYL TTAVNKFANY VNLSSSEKDL LEEPTCPKVL GDIVESCVGA VLLDSGFNLN
HVWKLMLMLL KPILSFCGMH IDPMRELRET CQYNGFDLGL PEPTKYNGEF HVKVEVNING
KMISCTAANR NSKDARKVAA QETLSKLKNY GYKHKRKSLE EILRSTTKKE SELIGYDEEP
INVEDDIDMQ MNNLLINGER TSIQSTAGDN KVDKNDANSG RNNKSNVVMQ NGCLPRGATD
KINQKEYHGD MVRKTARSFL YELCAANYWK PPEFELCNDE GPSHLRKFTC KVLIEITGTS
VSLLECYSDP KLQKRAAQEH AAEGALWYLK HLGYLPRDEN RF
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