MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=Zinc finger protein 1122 {ECO:0000313|Ensembl:ENSDARP00000136542}; |
 |
|
| MyHits synonyms | A0A0H2UJU0_DANRE , A0A0H2UJU0 , 05525C604C7B2D8F |
 Legends: 1, C2H2-type. {ECO:0000259|PROSITE:PS50157}; 2, iprf:ZINC_FINGER_C2H2_2 [T]; 3, ismart:ZnF_BED [T]; 4, ipat:ZINC_FINGER_C2H2_1 [T]; 5, ismart:ZnF_C2H2 [T].
| |
ID A0A0H2UJU0_DANRE Unreviewed; 482 AA.
AC A0A0H2UJU0;
DT 16-SEP-2015, integrated into UniProtKB/TrEMBL.
DT 16-SEP-2015, sequence version 1.
DT 10-MAY-2017, entry version 15.
DE SubName: Full=Zinc finger protein 1122 {ECO:0000313|Ensembl:ENSDARP00000136542};
GN Name=znf1122 {ECO:0000313|Ensembl:ENSDARP00000136542,
GN ECO:0000313|ZFIN:ZDB-GENE-141211-60};
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Cyprinidae; Danio.
OX NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000136542, ECO:0000313|Proteomes:UP000000437};
RN [1] {ECO:0000313|Ensembl:ENSDARP00000136542, ECO:0000313|Proteomes:UP000000437}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000136542,
RC ECO:0000313|Proteomes:UP000000437};
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
RA Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
RA McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
RA Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
RA Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
RA Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
RA Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
RA Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
RA Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
RA Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
RA Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
RA Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
RA Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
RA Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
RA Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA Saunders D., Wallis J., Babbage A., Hammond S.,
RA Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
RA Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
RA Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
RA Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
RA Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
RA Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
RA Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
RA Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
RA Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
RA Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
RA Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the
RT human genome.";
RL Nature 496:498-503(2013).
RN [2] {ECO:0000313|Ensembl:ENSDARP00000136542}
RP IDENTIFICATION.
RC STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000136542};
RG Ensembl;
RL Submitted (JUN-2015) to UniProtKB.
CC -!- CAUTION: The sequence shown here is derived from an Ensembl
CC automatic analysis pipeline and should be considered as
CC preliminary data. {ECO:0000313|Ensembl:ENSDARP00000136542}.
CC -----------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution-NoDerivs License
CC -----------------------------------------------------------------------
DR EMBL; BX470149; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CR450840; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CU466240; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR Ensembl; ENSDART00000169641; ENSDARP00000136542; ENSDARG00000098796.
DR ZFIN; ZDB-GENE-141211-60; znf1122.
DR GeneTree; ENSGT00870000136760; -.
DR OMA; RHWRINT; -.
DR Proteomes; UP000000437; Chromosome 4.
DR ExpressionAtlas; A0A0H2UJU0; baseline.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR003656; Znf_BED.
DR InterPro; IPR013087; Znf_C2H2_type.
DR SMART; SM00614; ZnF_BED; 4.
DR SMART; SM00355; ZnF_C2H2; 13.
DR SUPFAM; SSF57667; SSF57667; 7.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 13.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 13.
PE 4: Predicted;
KW Complete proteome {ECO:0000313|Proteomes:UP000000437};
KW Reference proteome {ECO:0000313|Proteomes:UP000000437}.
FT DOMAIN 115 142 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 143 170 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 171 198 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 199 226 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 227 254 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 255 282 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 283 310 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 311 338 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 339 366 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 367 394 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 395 422 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 423 450 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
FT DOMAIN 451 478 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 339 366 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 404 448 ismart:ZnF_BED [T]
FT MYHIT 199 226 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 341 361 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 285 305 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 199 221 ismart:ZnF_C2H2 [T]
FT MYHIT 423 450 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 115 137 ismart:ZnF_C2H2 [T]
FT MYHIT 145 165 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 173 193 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 367 394 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 397 417 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 311 333 ismart:ZnF_C2H2 [T]
FT MYHIT 339 361 ismart:ZnF_C2H2 [T]
FT MYHIT 313 333 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 451 478 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 236 280 ismart:ZnF_BED [T]
FT MYHIT 171 193 ismart:ZnF_C2H2 [T]
FT MYHIT 117 137 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 201 221 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 395 417 ismart:ZnF_C2H2 [T]
FT MYHIT 229 249 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 283 305 ismart:ZnF_C2H2 [T]
FT MYHIT 153 196 ismart:ZnF_BED [T]
FT MYHIT 143 165 ismart:ZnF_C2H2 [T]
FT MYHIT 395 422 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 227 249 ismart:ZnF_C2H2 [T]
FT MYHIT 255 277 ismart:ZnF_C2H2 [T]
FT MYHIT 283 310 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 352 392 ismart:ZnF_BED [T]
FT MYHIT 143 170 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 171 198 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 425 445 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 367 389 ismart:ZnF_C2H2 [T]
FT MYHIT 451 473 ismart:ZnF_C2H2 [T]
FT MYHIT 453 473 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 115 142 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 311 338 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 423 445 ismart:ZnF_C2H2 [T]
FT MYHIT 369 389 ipat:ZINC_FINGER_C2H2_1 [T]
FT MYHIT 255 282 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 227 254 iprf:ZINC_FINGER_C2H2_2 [T]
FT MYHIT 257 277 ipat:ZINC_FINGER_C2H2_1 [T]
SQ SEQUENCE 482 AA; 54715 MW; 05525C604C7B2D8F CRC64;
MAFIKVESED VKIEETSTVK QGDLQEQTGS VRTQRKTPAE ATDLHTVIKM AFIKEESEDV
KIEETFTVKQ EDLQEQTELI EENEGNKEEE HDVKIEEKTN LQTNGILKKR DENRFTCTQC
GRNFGRKGDL TLHMRIHTGE KLVTCTQCGK SFSKSSSLNQ HMRIHAGEKP SACSQCGKSF
SCSSHLNKHM RNHTREKPFS CTQCGKSFSY PSAFNKHMMI HTGEKPFSCT QCGKSFSYSS
SLNYHMMIHA GEKPSACSQC GKSFSCSSHL NKHMMIHTGE KPFTCTQCGK SFRNSLFLKQ
HMMIHTGEKP FTCTQCGKSF SQSSSLNHHI RIHTGEKPFT CTQCGKSFIQ SSQLNLHMRI
HTGEKPFTCT QCGKSFSRSS HLNYHMRIHT GEKPFSCTQC GKSLRRSSSL KQHMRIHTGE
KPFTCTQCGK SFRRSSHLNQ HMRIHTGEKP FSCTQCGKNF SKSSSLNHHM RIHTGEKPFT
CT
//
| |