Entry euk:A0A0G2KB94_RAT

ID   A0A0G2KB94_RAT          Unreviewed;       734 AA.
AC   A0A0G2KB94;
DT   22-JUL-2015, integrated into UniProtKB/TrEMBL.
DT   22-JUL-2015, sequence version 1.
DT   10-MAY-2017, entry version 12.
DE   SubName: Full=Coiled-coil domain-containing 142 {ECO:0000313|Ensembl:ENSRNOP00000075704};
GN   Name=LOC103692170 {ECO:0000313|RGD:9266814};
GN   Synonyms=Ccdc142 {ECO:0000313|Ensembl:ENSRNOP00000075704,
GN   ECO:0000313|RGD:1561779};
OS   Rattus norvegicus (Rat).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
OC   Muroidea; Muridae; Murinae; Rattus.
OX   NCBI_TaxID=10116 {ECO:0000313|Ensembl:ENSRNOP00000075704, ECO:0000313|Proteomes:UP000002494};
RN   [1] {ECO:0000313|Ensembl:ENSRNOP00000075704, ECO:0000313|Proteomes:UP000002494}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000075704,
RC   ECO:0000313|Proteomes:UP000002494};
RX   PubMed=15057822; DOI=10.1038/nature02426;
RG   Rat Genome Sequencing Project Consortium;
RA   Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
RA   Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
RA   Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
RA   Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
RA   Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
RA   Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
RA   Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T.,
RA   Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A.,
RA   Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M.,
RA   Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K.,
RA   Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S.,
RA   Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J.,
RA   Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y.,
RA   Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A.,
RA   Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J.,
RA   D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R.,
RA   Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A.,
RA   Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E.,
RA   Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E.,
RA   Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
RA   Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D.,
RA   Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M.,
RA   Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O.,
RA   Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O.,
RA   Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H.,
RA   Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S.,
RA   Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J.,
RA   Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
RA   Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E.,
RA   Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F.,
RA   Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K.,
RA   Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S.,
RA   Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M.,
RA   Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M.,
RA   Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A.,
RA   Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S.,
RA   Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G.,
RA   Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H.,
RA   Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R.,
RA   Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M.,
RA   Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H.,
RA   Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S.,
RA   Collins F.S.;
RT   "Genome sequence of the Brown Norway rat yields insights into
RT   mammalian evolution.";
RL   Nature 428:493-521(2004).
RN   [2] {ECO:0000313|Ensembl:ENSRNOP00000075704}
RP   IDENTIFICATION.
RC   STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000075704};
RG   Ensembl;
RL   Submitted (JUN-2015) to UniProtKB.
CC   -!- CAUTION: The sequence shown here is derived from an Ensembl
CC       automatic analysis pipeline and should be considered as
CC       preliminary data. {ECO:0000313|Ensembl:ENSRNOP00000075704}.
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DR   EMBL; AC117925; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; XP_001072498.1; XM_001072498.5.
DR   RefSeq; XP_008761307.1; XM_008763085.2.
DR   RefSeq; XP_232111.4; XM_232111.8.
DR   Ensembl; ENSRNOT00000082806; ENSRNOP00000075704; ENSRNOG00000058785.
DR   GeneID; 103692170; -.
DR   GeneID; 297380; -.
DR   KEGG; rno:103692170; -.
DR   KEGG; rno:297380; -.
DR   CTD; 84865; -.
DR   RGD; 1561779; Ccdc142.
DR   RGD; 9266814; LOC103692170.
DR   GeneTree; ENSGT00390000009871; -.
DR   OMA; CARHLQA; -.
DR   PhylomeDB; A0A0G2KB94; -.
DR   Proteomes; UP000002494; Chromosome 4.
DR   InterPro; IPR026700; CCDC142.
DR   PANTHER; PTHR21436; PTHR21436; 1.
DR   Pfam; PF14923; CCDC142; 1.
PE   4: Predicted;
KW   Complete proteome {ECO:0000313|Proteomes:UP000002494};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002494}.
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CC   The following FT lines are automated annotations from the MyHits database.
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FT   MYHIT       286    710       ipfam:CCDC142 [T]
SQ   SEQUENCE   734 AA;  79654 MW;  5569C41FDF405B3E CRC64;
     MARASRSSGL LPPITNVPPS WAQPLGDGEE RGKGKRGGLE LLAAMSAPCP DSGRQPWAPE
     SASGPMPFAL QRLRAELLRL HREREQLLRA RDCARHLQAV VRLLRSGSSA GSFSLQQLHG
     DLQMCPSRRA AQRLGFPGSR ETLLLARPVG LAAQHLDANI EMQLRTLGRA PASLGLTSQL
     AELLLALPFY HTLQGQSLSF VPGAARPFPA ARVLHLLAAE RGCQVADRLA EALGRSGLQD
     QLRRQCDQER ELLPGLLGLI GGVASRDSSG LRLGGPGALW SQYWTMLWAA CAQSLDLRVG
     PWGDPKAVAQ QLSQALCQAS LPQECEKELL SLCHSLFHRS LVCSWDQGFC QALGSAVGGQ
     SSPASPSTAE LLQRLFPPLL DILRQPRPEL SLCQPAGPTP VALGLCTLQT TLLWFLGKAQ
     QHLAAWAPGP FLLLIQKDLP PLLHAVEALS SLASEAAFSL EVEQQLGLEI QKLTARMQLL
     PKESLSLFFQ ECHKQATQGF KLHMPRGGYW RLRLCPEHPS DPSEYARVVV YTVLEPVLQG
     LRGLPPEAQA PALSQALTAT LGAWLDHILT HGIRFSLQGA LQLKQDFGVV REVLEQEQWG
     LSPELRQTLL SLSIFQQLDG ALLCLLQQPL PKNPVQRRPH RCCFCNEVQT IELPTSSLNS
     LESLAPPLRP GVSPAQNTHL LSTLGGGGRG GGGGGPSPEA YLAGNQQAWL ALRLHQHPRW
     HLPFFSCLGT SPEP
//