MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | RecName: Full=Inner membrane protein ygbE; |
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| MyHits synonyms | YGBE_ECOLI , P46141 , Q2MA80 , Q46895 , E3ED0F889EA9C21F |
 Legends: 1, TOPO_DOM Periplasmic (Potential); 2, TOPO_DOM Cytoplasmic (Potential); 3, TRANSMEM Potential; 4, CONFLICT VAVVVGIALHSLMDG -> SRSGGDCAAFIDGRK (in Ref. 1).
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ID YGBE_ECOLI Reviewed; 107 AA.
AC P46141; Q2MA80; Q46895;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1997, sequence version 2.
DT 03-NOV-2009, entry version 57.
DE RecName: Full=Inner membrane protein ygbE;
GN Name=ygbE; OrderedLocusNames=b2749, JW2719;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX MEDLINE=97426617; PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J.,
RA Mau B., Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1474(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains
RT MG1655 and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-81.
RC STRAIN=K12;
RX MEDLINE=92268080; PubMed=1316900;
RA Leyh T.S., Vogt T.F., Suo Y.;
RT "The DNA sequence of the sulfate activation locus from Escherichia
RT coli K-12.";
RL J. Biol. Chem. 267:10405-10410(1992).
RN [4]
RP IDENTIFICATION.
RX MEDLINE=96032851; PubMed=7567469; DOI=10.1093/nar/23.17.3554;
RA Borodovsky M., McIninch J., Koonin E.V., Rudd K.E., Medigue C.,
RA Danchin A.;
RT "Detection of new genes in a bacterial genome using Markov models for
RT three gene classes.";
RL Nucleic Acids Res. 23:3554-3562(1995).
RN [5]
RP TOPOLOGY [LARGE SCALE ANALYSIS].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=15919996; DOI=10.1126/science.1109730;
RA Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.;
RT "Global topology analysis of the Escherichia coli inner membrane
RT proteome.";
RL Science 308:1321-1323(2005).
CC -!- SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane
CC protein.
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DR EMBL; U29579; AAA69259.1; -; Genomic_DNA.
DR EMBL; U00096; AAC75791.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE76826.1; -; Genomic_DNA.
DR EMBL; M74586; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR PIR; A65056; A65056.
DR RefSeq; AP_003316.1; -.
DR RefSeq; NP_417229.1; -.
DR STRING; P46141; -.
DR GeneID; 947268; -.
DR GenomeReviews; AP009048_GR; JW2719.
DR GenomeReviews; U00096_GR; b2749.
DR KEGG; ecj:JW2719; -.
DR KEGG; eco:b2749; -.
DR EchoBASE; EB2569; -.
DR EcoGene; EG12707; ygbE.
DR HOGENOM; P46141; -.
DR OMA; DETTWSL; -.
DR BioCyc; EcoCyc:EG12707-MON; -.
DR Genevestigator; P46141; -.
DR GO; GO:0016021; C:integral to membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-KW.
PE 1: Evidence at protein level;
KW Cell inner membrane; Cell membrane; Complete proteome; Membrane;
KW Transmembrane.
FT CHAIN 1 107 Inner membrane protein ygbE.
FT /FTId=PRO_0000169311.
FT TOPO_DOM 1 20 Cytoplasmic (Potential).
FT TRANSMEM 21 43 Potential.
FT TOPO_DOM 44 52 Periplasmic (Potential).
FT TRANSMEM 53 75 Potential.
FT TOPO_DOM 76 86 Cytoplasmic (Potential).
FT TRANSMEM 87 106 Potential.
FT TOPO_DOM 107 107 Periplasmic (Potential).
FT CONFLICT 67 81 VAVVVGIALHSLMDG -> SRSGGDCAAFIDGRK (in
FT Ref. 1).
CC --------------------------------------------------------------------------
CC The following FT lines are automated annotations from the MyHits database.
CC --------------------------------------------------------------------------
FT MYHIT 1 107 ipfam:DUF3561 [T]
SQ SEQUENCE 107 AA; 12017 MW; E3ED0F889EA9C21F CRC64;
MRNSHNITLT NNDSLTEDEE TTWSLPGAVV GFISWLFALA MPMLIYGSNT LFFFIYTWPF
FLALMPVAVV VGIALHSLMD GKLRYSIVFT LVTVGIMFGA LFMWLLG
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