MyHits has reached its end of life and no longer provides data or services. Thank you for your support and trust for more than 23 years!
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
However, the webserver will remain online in its present form at least until end of March 2025.
To ensure the future of MyHits, we would be happy if a person or community would take over the resource or parts of it. Interested? Please contact us (myhits [at] sib.swiss).
Pagni M, Ioannidis V, Cerutti L, Zahn-Zabal M, Jongeneel CV, Hau J, Martin O, Kuznetsov D, Falquet L.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7
- MyHits
| Description | SubName: Full=(P)ppGpp synthetase I {ECO:0000313|EMBL:ABB63024.1}; |
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| MyHits synonyms | Q32CD1_SHIDS , Q32CD1 , FA269709F15E1F25 |
 Legends: 1, ACT. {ECO:0000259|PROSITE:PS51671}; 2, ipfam:TGS [T]; 3, ipfam:ACT_4 [T]; 4, ismart:RelA_SpoT [T]; 5, ipfam:RelA_SpoT [T]; 6, iprf:ACT [T].
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ID Q32CD1_SHIDS Unreviewed; 744 AA.
AC Q32CD1;
DT 06-DEC-2005, integrated into UniProtKB/TrEMBL.
DT 06-DEC-2005, sequence version 1.
DT 10-MAY-2017, entry version 79.
DE SubName: Full=(P)ppGpp synthetase I {ECO:0000313|EMBL:ABB63024.1};
GN Name=relA {ECO:0000313|EMBL:ABB63024.1};
GN OrderedLocusNames=SDY_3001 {ECO:0000313|EMBL:ABB63024.1};
OS Shigella dysenteriae serotype 1 (strain Sd197).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Shigella.
OX NCBI_TaxID=300267 {ECO:0000313|EMBL:ABB63024.1, ECO:0000313|Proteomes:UP000002716};
RN [1] {ECO:0000313|EMBL:ABB63024.1, ECO:0000313|Proteomes:UP000002716}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Sd197 {ECO:0000313|EMBL:ABB63024.1,
RC ECO:0000313|Proteomes:UP000002716};
RX PubMed=16275786; DOI=10.1093/nar/gki954;
RA Yang F., Yang J., Zhang X., Chen L., Jiang Y., Yan Y., Tang X.,
RA Wang J., Xiong Z., Dong J., Xue Y., Zhu Y., Xu X., Sun L., Chen S.,
RA Nie H., Peng J., Xu J., Wang Y., Yuan Z., Wen Y., Yao Z., Shen Y.,
RA Qiang B., Hou Y., Yu J., Jin Q.;
RT "Genome dynamics and diversity of Shigella species, the etiologic
RT agents of bacillary dysentery.";
RL Nucleic Acids Res. 33:6445-6458(2005).
CC -!- FUNCTION: In eubacteria ppGpp (guanosine 3'-diphosphate 5-'
CC diphosphate) is a mediator of the stringent response that
CC coordinates a variety of cellular activities in response to
CC changes in nutritional abundance. {ECO:0000256|RuleBase:RU003847}.
CC -!- SIMILARITY: Belongs to the relA/spoT family.
CC {ECO:0000256|RuleBase:RU003847}.
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DR EMBL; CP000034; ABB63024.1; -; Genomic_DNA.
DR RefSeq; WP_000226815.1; NC_007606.1.
DR RefSeq; YP_404515.1; NC_007606.1.
DR ProteinModelPortal; Q32CD1; -.
DR SMR; Q32CD1; -.
DR PRIDE; Q32CD1; -.
DR EnsemblBacteria; ABB63024; ABB63024; SDY_3001.
DR GeneID; 3797403; -.
DR KEGG; sdy:SDY_3001; -.
DR PATRIC; 18696387; VBIShiDys99784_3600.
DR HOGENOM; HOG000018300; -.
DR KO; K00951; -.
DR OMA; TEIGHNC; -.
DR OrthoDB; POG091H01YD; -.
DR Proteomes; UP000002716; Chromosome.
DR GO; GO:0016597; F:amino acid binding; IEA:InterPro.
DR GO; GO:0015969; P:guanosine tetraphosphate metabolic process; IEA:InterPro.
DR CDD; cd05399; NT_Rel-Spo_like; 1.
DR CDD; cd01668; TGS_RelA_SpoT; 1.
DR Gene3D; 3.10.20.30; -; 1.
DR InterPro; IPR002912; ACT_dom.
DR InterPro; IPR012675; Beta-grasp_dom.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR004811; RelA/Spo_fam.
DR InterPro; IPR007685; RelA_SpoT.
DR InterPro; IPR004095; TGS.
DR InterPro; IPR012676; TGS-like.
DR InterPro; IPR033655; TGS_RelA.
DR Pfam; PF13291; ACT_4; 1.
DR Pfam; PF13328; HD_4; 1.
DR Pfam; PF04607; RelA_SpoT; 1.
DR Pfam; PF02824; TGS; 1.
DR SMART; SM00954; RelA_SpoT; 1.
DR SUPFAM; SSF81271; SSF81271; 1.
DR TIGRFAMs; TIGR00691; spoT_relA; 1.
DR PROSITE; PS51671; ACT; 1.
PE 3: Inferred from homology;
KW Complete proteome {ECO:0000313|Proteomes:UP000002716};
KW Reference proteome {ECO:0000313|Proteomes:UP000002716}.
FT DOMAIN 668 743 ACT. {ECO:0000259|PROSITE:PS51671}.
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CC The following FT lines are automated annotations from the MyHits database.
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FT MYHIT 406 465 ipfam:TGS [T]
FT MYHIT 664 740 ipfam:ACT_4 [T]
FT MYHIT 44 191 ipfam:HD_4 [T]
FT MYHIT 251 361 ismart:RelA_SpoT [T]
FT MYHIT 251 360 ipfam:RelA_SpoT [T]
FT MYHIT 668 743 iprf:ACT [T]
SQ SEQUENCE 744 AA; 83876 MW; FA269709F15E1F25 CRC64;
MVAVRSAHIN KAGEFDPEKW IASLGITSQK SCECLAETWA YCLQQTQGHP DASLLLWRGV
EMVEILSTLS MDIDTLRAAL LFPLADANVV SEDVLRESVG KSVVNLIHGV RDMAAIRQLK
ATHTDSVSSE QVDNVRRMLL AMVDDFRCVV IKLAERIAHL REVKDAPEDE RVLAAKECTN
IYAPLANRLG IGQLKWELED YCFRYLHPTE YKRIAKLLHE RRLDREHYIE EFVGHLRAEM
KAEGVKAEVY GRPKHIYSIW RKMQKKNLAF DELFDVRAVR IVAERLQDCY AALGIVHTHY
RHLPDEFDDY VANPKPNGYQ SIHTVVLGPG GKTVEIQIRT KQMHEDAELG VAAHWKYKEG
AAAGGARSGH EDRIAWLRKL IAWQEEMADS GEMLDEVRSQ VFDDRVYVFT PKGDVVDLPA
GSTPLDFAYH IHSDVGHRCI GAKIGGRIVP FTYQLQMGDQ IEIITQKQPN PSRDWLNPNL
GYVTTSRGRS KIHAWFRKQD RDKNILAGRQ ILDDELEHLG ISLKEAEKHL LPRYNFNDVD
ELLAAIGGGD IRLNQMVNFL QSQFNKPSAE EQDAAALKQL QQKSYTPQNR SKDNGRVVVE
GVGNLMHHIA RCCQPIPGDE IVGFITQGRG ISVHRADCEQ LAELRSHAPE RIVDAVWGES
YSAGYSLVVR VVANDRSGLL RDITTILANE KVNVLGVASR SDTKQQLATI DMTIEIYNLQ
VLGRVLGKLN QVPDVIDARR LHGS
//
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