... properties.¹

In promoters, the motifs would be transcription factor binding sites, CpG islands, TATA-boxes and the like; but at other levels it could include exons, genes, terminators, cistrons, etc.

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... specified:²

In the examples below, metamotif [!pfam:SH3|prf:SH3] was searched in the human Vav oncogene, VAV_HUMAN. The names 'pfam:SH3' and 'prf:SH3' represents a match of a Src Homology 3 domain motif according to Pfam and PROSITE, respectively.

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...Parsing_Techniques³

This book is currently out of print, but the whole text is available from http://www.cs.vu.nl/~dick/PTAPG.html

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